Publications

Publications : Journals | Books | Conferences

Journal Articles

Peer-reviewed articles

  1. Montakarn Sresung, Thitima Srathongneam, Phongsawat Paisantham, Rojana Sukchawalit, Wirongrong Whangsuk, Ryo Honda, Jutamaad Satayavivad, Skorn Mongkolsuk, Kwanrawee Sirikanchana* (2024) Quantitative distribution of antibiotic resistance genes and crAssphage in a tropical urbanized watershed. Sci. Total Environ. (accepted)
  2. Yadpiroon Siri, Montakarn Sresung, Phongsawat Paisantham, Skorn Mongkolsuk, Kwanrawee Sirikanchana, Ryo Honda, Nopadol Precha, Prasert Makkaew* (2024) Antibiotic Resistance Genes and crAssphage in Hospital Wastewater and a canal receiving the treatment effluent. Environ. Poll. 12, 124771. DOI: 10.1016/j.envpol.2024.124771
  3. Zulkarnaini, Norihisa Matsuura, Sui Kanazawa, Ryo Honda, Ryoko Yamamoto-Ikemoto* (2024) Optimizing start-up strategies for the two-inflow nitritation/anammox process: Influence on biofilm microbial community composition. Water Sci. Technol. 89(6), 1583-1594. DOI: 10.2166/wst.2024.065
  4. Vishnu Sharma, Hitomi Takamura, Manish Biyani*, Ryo Honda (2024) Real-time on-site monitoring of viruses in wastewater using Nanotrap® particles and RICCA technologies. Biosensors 14, 115. DOI: 10.3390/bios14030115
  5. Minhao Xiao, Dukwoo Jun, Ryo Honda, Shaily Mahendra, Richard B. Kaner, Eric M.V. Hoek* (2024) On the disproportionate contribution of membrane electron-donor functionality in membrane biofouling. ACS Applied Materials & Interfaces DOI: 10.1021/acsami.3c15488
  6. Momoko Kaji, Satoshi Ezaki, Ryotaro Okazaki, Tomomi Yamazaki, Yui Araki, Hiroe Hara-Yamamura, Akihiko Hata, Ryo Honda* (2023) Feasibility of wastewater-based epidemiology on COVID-19 in 3 cities of Japan and development of an early warning indicator of disease outbreak. Journal of Japan Society of Civil Engineers, Ser. G. 79(25), 23-25043. DOI: 10.2208/jscejj.23-25043
  7. Shahanaz Parvin, Hiroe Hara-Yamamura*, Yuma Kanai, Aki Yamasaki, Tadashi Adachi, Sovannlaksmy Sorn, Ryo Honda, Hiroshi Yamamura (2023) Important properties of anion exchange resins for efficient removal of PFOS and PFOA from groundwater. Chemosphere 341, 139983. DOI: 10.1016/j.chemosphere.2023.139983
  8. Manish Kumar*, Madhvi Joshi, Guangming Jiang, Rintaro Yamada, Ryo Honda, Vaibhav Srivastava, Jürgen Mahlknecht, Damia Barcelo, Sabarathinam Chidambram, Anwar Khursheed, David W Graham, Ritusmita Goswami, Keisuke Kuroda, Ananda Tiwari, Chaitanya Joshi (2023) Response of wastewater-based epidemiology predictor for the second wave of COVID-19 in Ahmedabad, India: A long-term data perspective. Environ. Poll. 337, 122471. DOI: 10.1016/j.envpol.2023.122471 
  9. Muhammad Adnan Sabar, Than Van Huy, Yoshinori Sugie, Hiroyuki Wada, Bo Zhao, Norihisa Matsuura, Masaru Ihara, Toru Watanabe, Hiroaki Tanaka, Ryo Honda* (2023) Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent. J. Water Health 21(8), 1032-1050. DOI: 10.2166/wh.2023.073
  10. Kazuyoshi Koike, Ryo Honda, Masataka Aoki, Ryoko Yamamoto-Ikemoto, Kazuaki Syutsubo, Norihisa Matsuura* (2023) A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes. Environ. Microbiol. Rep. DOI: 10.1111/1758-2229.13189
  11. Md. Alamin, Hiroe Hara-Yamamura, Akihiko Hata, Bo Zhao, Masaru Ihara, Hiroaki Tanaka, Toru Watanabe, Ryo Honda* (2023) Reduction of SARS-CoV-2 by biological nutrient removal and disinfection processes in full-scale wastewater treatment plants. Sci. Total Environ. DOI: 10.1016/j.scitotenv.2023.165097
  12. Ryo Honda*, Norihisa Matsuura, Hiroe Hara-Yamamura, Sovannlaksmy Sorn, Yuta Morinaga, Van Huy Than, Muhammad Adnan Sabar, Yalkhin Masakke, Sawako Asakura, Toru Watanabe (2023) Transition of antimicrobial resistome in wastewater treatment plants: impact of process configuration, geographical location and season. npj Clean Water 6, 46. DOI: 10.1038/s41545-023-00261-x
  13. Sovannlaksmy Sorn, Hiroe Hara-Yamamura, Sreyla Vet, Minhao Xiao, Eric M.V. Hoek, Ryo Honda* (2023) Biological treatment of perfluorooctanesulfonic acid (PFOS) using microbial capsules of a polysulfone membrane. Chemosphere 329, 138585. DOI: 10.1016/j.chemosphere.2023.138585
  14. Ryoko Yamamoto-Ikemoto*, Norihisa Matsuura, Ryo Honda, Hiroe Hara-Yamamura, Kanhchany Some, Sereyroth Prak, Kazuyoshi Koike, Taketo Togari (2023) Ammonia tolerance and microbial community in thermophilic co-digestion of sewage sludge initiated with lignocellulosic biomass. Biores. Technol. 376, 128834. DOI:  10.1016/j.biortech.2023.128834
  15. Rasindu Galagoda, Monychottepy Chanto, Yasuyuki Takemura, Noriko Tomioka, Kazuaki Syutsubo, Ryo Honda, Ryoko Yamamoto-Ikemoto, Norihisa Matsuura* (2023) Quantitative 16S rRNA gene amplicon sequencing for comprehensive pathogenic bacterial tracking in a municipal wastewater treatment plant. ACS ES&T Water. DOI: 10.1021/acsestwater.2c00349
  16. Pia Ramos, Ryo Honda, Eric M.V. Hoek, Shaily Mahendra* (2023) Carbon/nitrogen ratios determine biofilm formation and characteristics in model microbial cultures. Chemosphere 313, 137628. DOI: 10.1016/j.chemosphere.2022.137628
  17. Khathapon Pinpatthanapong, Wanthanee Khetkorn, Ryo Honda, Songkeart Phattarapattamawong, Chairat Treesubsuntorn, Namchai Panasan, Patcharaporn Boonmawat, Yada Tianthong,  Rumpa Jutakanoke, Pradthana Prachanurak, Sovannlaksmy Sorn, Jarungwit Boonnorat* (2022) Effects of high-strength landfill leachate effluent on stress-induced microalgae lipid production and post-treatment micropollutant degradation. J. Environ. Manag. 324, 116367. DOI: 10.1016/j.jenvman.2022.116367
  18. Kyohei Otani, Hiroe Hara-Yamamura*, Hiroshi Yamamura, Ryoko Yamamoto-Ikemoto, Ryo Honda (2022) Deep SVDD based modeling of fluorescence feature of drinking waters for evaluation of reclaimed water quality. Journal of Japan Society of Civil Engineers, Ser. G. 78(7), III_73-III_80. (in Japanese)  DOI: 10.2208/jscejer.78.7_III_73 
  19. Xuan Li, Shuxin Zhang, Samendra Sherchan, Gorka Orive, Unax Lertxundi, Eiji Haramoto, Ryo Honda, Manish Kumar, Sudipti Arora, Masaaki Kitajima, Guangming Jiang* (2022) Correlation between SARS-CoV-2 RNA concentration in wastewater and COVID-19 cases in community: A systematic review and meta-analysis. J. Hazard. Mater. 129848. DOI: 10.1016/j.jhazmat.2022.129848
  20. Rongxuan Wang, Md. Alamin, Shohei Tsuji, Hiroe Hara-Yamamura, Akihiko Hata, Bo Zhao, Masaru Ihara, Ryo Honda* (2022) Removal performance of SARS-CoV-2 in wastewater treatment by membrane bioreactor, anaerobic-anoxic-oxic, and conventional activated sludge processes. Sci. Total Environ. 851,158310. DOI: 10.1016/j.scitotenv.2022.158310
  21. Muhammad Adnan Sabar, Ryo Honda*, Eiji Haramoto (2022) CrAssphage as an indicator of human-fecal contamination in water environment and virus reduction in wastewater treatment. Water Res. 221, 118827. DOI: 10.1016/j.watres.2022.118827
  22. Hiroe Hara-Yamamura, Koki Inoue, Tomoaki Matsumoto, Ryo Honda, Kazuaki Ninomiya, Hiroshi Yamamura* (2022) Rejection of perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS) by severely chlorine damaged RO membranes with different salt rejection ratios. Chem. Eng. J. 137398. DOI: 10.1016/j.cej.2022.137398
  23. S. Sorn, Sulfikar, M-Y. Lin, M. Shuto, M. Noguchi, R. Honda*, R. Yamamoto-Ikemoto, T. Watanabe (2022) Potential impact factors on the enhancement of antibiotic resistance in a lake environment. J. Water Health  20(6), 1017–1026. DOI: 10.2166/wh.2022.074
  24. Guangming Jiang*, Jiangping Wu, Jennifer Weidhaas, Xuan Li, Yan Chen, Jochen Mueller, Jiaying Li, Manish Kumar, Xu Zhou, Sudipti Arora, Eiji Haramoto, Samendra Sherchan, Gorka Orive, Unax Lertxundi, Ryo Honda, Masaaki Kitajima, Greg Jackson (2022) Artificial neural network-based estimation of COVID-19 case numbers and effective reproduction rate using wastewater-based epidemiology. Water Res. 218, 118451. DOI: 10.1016/j.watres.2022.118451
  25. Minhao Xiao, Fan Yang, Sungju Im, Derrick S. Dlamini, David Jassby, Shaily Mahendra, Ryo Honda, Eric M.V. Hoek* (2022) Characterizing surface porosity of porous membranes via contact angle measurements. J. Membr. Sci. Lett. 100022. DOI: 10.1016/j.memlet.2022.100022
  26. Xuan Li, Jagadeeshkumar Kulandaivelu, Ying Guo, Shuxin Zhang, Jiahua Shi, Jake O’Brien, Sudipti Arora, Manish Kumar, Samendra P. Sherchan, Ryo Honda, Greg Jackson, Stephen P. Luby, Guangming Jiang* (2022) SARS-CoV-2 shedding sources in wastewater and implications for wastewater-based epidemiology. J. Hazard. Mater. 432, 128667. DOI: 10.1016/j.jhazmat.2022.128667
  27. Phuc-Nguon Hong, Norihisa Matsuura, Mana Noguchi, Ryoko Yamamoto-Ikemoto, Ryo Honda* (2022) Change of extracellular polymeric substances and microbial community in biofouling mitigation by continuous vanillin dose in membrane bioreactor. J. Water Process Eng. 47, 102644. DOI: 10.1016/j.jwpe.2022.102644
  28. Md. Alamin, Shohei Tsuji, Akihiko Hata, Hiroe Hara-Yamamura, Ryo Honda* (2022) Selection of surrogate viruses for process control in detection of SARS-CoV-2 in wastewater. Sci. Total Environ. 823, 153737. DOI: 10.1016/j.scitotenv.2022.153737
  29. Yuka Kosugi, Norihisa Matsuura, Ryo Honda, Takahiro Yamashita, Ryoko Yamamoto-Ikemoto* (2022) Effects of organic carbon and sulfide on the anammox reaction in the anoxic column in the SRDAPN process for treating high-strength wastewater. J. Environ. Manag. 307, 114459. DOI: 10.1016/j.jenvman.2022.114459
  30. Junpei Ogawa, Hiromichi Yamaguchi*, Ryo Honda, Risaki Ihahara, Shoichiro Nakayama (2021) Time-series analysis of people’s behaviors in Kanazawa city under COVID-19 pandemic.  Journal of Japan Society of Civil Engineers, Ser. D3. 77(5), I_649-I_662. (in Japanese) DOI: 10.2208/jscejipm.77.5_I_649
  31. Makoto Yasojima*, Takuya Tomono, Fumi Daigo, Hiroaki Takemori, Masaru Ihara, Ryo Honda, Akihiko Hata And Hiroaki Tanaka (2021) Development and field verification of novel passive sampler for early detection of SARS-CoV-2 patients for individual building wastewater. Journal of Japan Society of Civil Engineers, Ser. G.  77(7), III_179-190. (in Japanese) DOI: 10.2208/jscejer.77.7_III_179
  32. Rongxuan Wang, Norihisa Matsuura, Hiroe Hara-Yamamura, Toru Watanabe, Ryo Honda* (2021) Initial behaviors and removal of extracellular plasmid gene in membrane bioreactor. J. Environ. Manag. 298, 113541. DOI: 10.1016/j.jenvman.2021.113541
  33. Jarungwit Boonnorat*, Ryo Honda, Pornpan Panichnumsin, Rumpa Jutakanoke, Nimaradee Boonapatcharoen, Pradthana Prachanurak (2021) Treatment efficiency and greenhouse gas emissions of non-floating and floating bed activated sludge system with acclimatized sludge treating landfill leachate. Biores. Technol. 330, 124952. DOI: 10.1016/j.biortech.2021.124952
  34. Mana Noguchi, Ryo Aizawa, Daisuke Nakazawa, Yoshiki Hakumura, Yasuhiro Furuhashi, Sen Yang, Kazuaki Ninomiya, Kenji Takahashi, Ryo Honda* (2021) Application of real treated wastewater to starch production by microalgae: potential effect of nutrients and microbial contamination. Biochem. Eng. J. 169, 107973. DOI: 10.1016/j.bej.2021.107973
  35. Norihisa Matsuura*, Yalkhin Masakke, Smruthi Karthikeyan, Sui Kanazawa, Ryo Honda, Ryoko Yamamoto-Ikemoto, Konstantinos T. Konstantinidis (2021) Metagenomic insights into the effect of sulfate on enhanced biological phosphorus removal. Appl. Microbiol. Biotechnol. 105, 2181–2193. DOI: 10.1007/s00253-021-11113-4 
  36. Dewi Nilawati, Norihisa Matsuura, Ryo Honda, Hiroe Hara-Yamamura, Neni Sintawardani, Ryoko Yamamoto-Ikemoto* (2021) Methane recovery from acidic tofu wastewater using an anaerobic fixed-bed reactor with bamboo as the biofilm carrier. J. Mater. Cycl. Waste Manag. 23, 537–547. DOI: 10.1007/s10163-020-01145-9
  37. Manish Kumar, Md. Alamin, Keisuke Kuroda, Kiran Dhangar, Akihiko Hata, Hiromichi Yamaguchi, Ryo Honda* (2021) Potential discharge, attenuation and exposure risk of SARS-CoV-2 in natural water bodies receiving treated wastewater. npj Clean Water 4, 8. DOI: 10.1038/s41545-021-00098-2.
  38. Akihiko Hata, Hiroe Hara-Yamamura, Yuno Meuchi, Shota Imai, Ryo Honda* (2021) Detection of SARS-CoV-2 in wastewater in Japan during a COVID-19 outbreak. Sci. Total Environ. 758, 143578. DOI: 10.1016/j.scitotenv.2020.143578 * ESI Hot Paper (Top 0.1% citations) 2021v3
  39. Yasuhiro Furuhashi, Hiroe Hara, Hiroshi Hasegawa, Ryo Honda* (2020) Recovery condition of rare earths from phosphors using biosorption by microalgae. Journal of Japan Society of Civil Engineers, Ser. G. 76(7), III_319-326. (in Japanese) DOI: 10.2208/jscejer.76.7_III_319
  40. Ryoko Yamamoto-Ikemoto*, Hiroyuki Shimidzu, Taketo Togari, Takero Misaki, Norihisa Matsuura, Ryo Honda (2020) Thermophilic high solid co-digestion of excess sludge and rice straw in a oxidation ditch plant – A pilot scale plant experiment -. Journal of Japan Society of Civil Engineers, Ser. G. 76(7), III_461-479. (in Japanese) DOI: 10.2208/jscejer.76.7_III_471
  41. Manish Kumar*, Sanjeeb Mohapatra, Payal Mazumder, Ashwin Singh, Ryo Honda, Chuxia Lin, Rina Kumari, Ritusmita Goswami, Pawan Kumar Jha, Meththika Vithanage, Keisuke Kuroda (2020) Making waves perspectives of modeling and monitoring of SARS-CoV-2 in aquatic environment for COVID-19 Pandemic. Curr. Pollution Rep. 6, 468-479. DOI: 10.1007/s40726-020-00161-5
  42. Qiaochu Liang, Takahiro Yamashita, Kazuyoshi Koike, Norihisa Matsuura, Ryo Honda, Hiroe Hara-Yamamura, Hiroshi Yokoyama, Ryoko Yamamoto-Ikemoto* (2020) A bioelectrochemical system-based trickling filter reactor for wastewater treatment. Biores. Technol. 315, 123798. DOI: 10.1016/j.biortech.2020.123798
  43. Ryo Honda*, Chihiro Tachi, Mana Noguchi, Ryoko Yamamoto-Ikemoto, Toru Watanabe (2020) Fate and seasonal change of Escherichia coli resistant to different antibiotic classes at each stage of conventional activated sludge process. J. Water Health. 18(6), 879-889. DOI: 10.2166/wh.2020.013
  44. Manish Kumar*, Sulfikar, Tushara Chaminda, Arbind  K. Patel, Himaya Sewwandi, Payal Mazumder, Madhvi Joshi, Ryo Honda (2020) Prevalence of antibiotic resistance in the tropical rivers of Sri Lanka and India. Environ. Res. 188, 109765. DOI: 10.1016/j.envres.2020.109765
  45. Apichai Prakhongsak, Alongkorn Kanyatrakul, Supaporn Phanwilai, Chairat Treesubsuntorn, Ryo Honda, Jarungwit Boonnorat* (2020) Effect of leachate effluent from activated sludge and membrane bioreactor systems with acclimatized sludge on plant seed germination. Sci. Total Environ. 724, 138275. DOI: 10.1016/j.scitotenv.2020.138275.
  46. Ryo Honda*, Chihiro Tachi, Keisuke Yasuda, Tatsuki Hirata, Mana Noguchi, Hiroe Hara-Yamamura, Ryoko Yamamoto-Ikemoto, Toru Watanabe (2020) Estimated discharge of antibiotic resistant bacteria from combined sewer overflow of urban sewage system. npj Clean Water 3, 15. DOI: 10.1038/s41545-020-0059-5
  47. Manish Kumar*, Tushara Chaminda, Ryo Honda (2020) Seasonality impels the antibiotic resistance in river water of the emerging country: A case of Kelani River, Sri Lanka. npj Clean Water 3, 12. DOI: 10.1038/s41545-020-0058-6
  48. Manish Kumar*, Bhagwana Ram, Sulfikar, Ryo Honda, Tushara Chaminda (2020) Treatment enhances the prevalence of antibiotic-resistant bacteria and antibiotic resistance genes in the wastewater of Sri Lanka, and India. Environ. Res. 183, 109179. DOI: 10.1016/j.envres.2020.109179
  49. Hiroyuki Shimidzu, Norihisa Matsuura, Kanhchany Som, Taketo Togari, Takeo Misaki, Ryo Honda, Ryoko Yamamoto-Ikemoto* (2019) Effect of rice straw addition on high soiid thermophiric digestion of sewage sludge from an oxidation ditch plant. Journal of Japan Society of Civil Engineers, Ser. G. 75(7), III_451-III_459. (in Japanese) DOI: 10.2208/jscejer.75.7_III_451
  50. Sui Kanazawa, Norihisa Matsuura, Ryo Honda, Ryoko Yamamoto-Ikemoto* (2019) Enhancement of methane production and phosphorus recovery with a novel pre-treatment of excess sludge using waste plaster board. J. Environ. Manag. 255, 109844. DOI: 10.1016/j.jenvman.2019.109844
  51. Phuc-Nguon Hong, Mana Noguchi, Norihisa Matsuura, Ryo Honda* (2019) Mechanism of biofouling enhancement in a membrane bioreactor under constant trans-membrane pressure operation. J. Membr. Sci. 592, 117391. DOI: 10.1016/j.memsci.2019.117391
  52. Manish Kumar*, Bhagwana Ram, Ryo Honda, Chomphunut Poopipattana, Vu Duc Canh, Tushara Chaminda, Hiroaki Furumai (2019) Concurrence of antibiotic resistant bacteria (ARB), viruses, pharmaceuticals and personal care products (PPCPs) in ambient waters of Guwahati, India: Urban vulnerability and resilience perspective. Sci. Total Environ. 693, 133640.  DOI: 10.1016/j.scitotenv.2019.133640
  53. Smarch Panchavinin, Tomohiro Tobino, Hiroe Hara-Yamamura, Norihisa Matsuura, Ryo Honda* (2019) Candidates of quorum sensing bacteria in activated sludge associated with N-acyl homoserine lactones. Chemosphere  236, 124292. DOI: 10.1016/j.chemosphere.2019.07.023
  54. Jarungwit Boonnorat*, Alongkorn Kanyatrakul, Apichai Prakhongsak, Ryo Honda, Pornpan Panichnumsin, Nimaradee Boonapatcharoen (2019) Effect of hydraulic retention time on micropollutant biodegradation in activated sludge system augmented with acclimatized sludge treating low-micropollutants wastewater. Chemosphere 230, 606-615. DOI: 10.1016/j.chemosphere.2019.05.039
  55. Ryo Honda*, Phuon-Thanh Phan, Tomohiro Tobino, Sirilak Prasertkulsak, Smarch Panchavinin, Phuc-Nguon Hong, Chanreaksmey Taing, Mana Noguchi, Wilai Chiemchaisri, Chart Chiemchaisri (2019) Diversity of N-acyl homoserine lactones in activated sludge detected by Fourier transform mass spectrometry. npj Clean Water 2, 11. DOI: 10.1038/s41545-019-0035-0
  56. Tingting Gu, Bin Shen, Changyan Huang, Ryo Honda, Ryoko Yamamoto-Ikemoto* (2019) Effects of biomass addition on organic composition of supernatant in sludge digestion process. J. Water Environ. Technol. 17(1), 1-8. DOI: 10.2965/jwet.18-029
  57. Yasuhiro Furuhashi, Ryo Honda*, Hiroe Hara-Yamamura, Shoko Kobayashi, Koichi Higashimine, Hiroshi Hasegawa (2019) Optimum conditions of pH, temperature and preculture for biosorption of europium by microalgae Acutodesmus acuminatus. Biochem. Eng. J. 143, 58-64. DOI: 10.1016/j.bej.2018.12.007
  58. Taketo Togari*, Takeo Misaki, Hiroyuki Shimizu, Norihisa Matsuura, Ryo Honda, Ryoko Yamamoto-Ikemoto (2018) A study of rice straw recycling system by the anaerobic co-digestion with sewage sludge. Journal of Japan Society of Civil Engineers, Ser. G 74(7), III_215-224. (in Japanese) DOI: 10.2208/jscejer.74.III_215
  59. Jarungwit Boonnorat*, Ryo Honda, Anish Ghimire, Somkiet Techkarnjanaruk, Sivakorn Angthong (2018) Enhanced micropollutant biodegradation and assessment of nitrous oxide concentration reduction in wastewater treated by acclimatized sludge bioaugmentation. Sci. Total Environ. 637–638, 771–779. DOI: 10.1016/j.scitotenv.2018.05.066
  60. Jarungwit Boonnorat*, Somkiet Techkarnjanaruk, Ryo Honda, Sivakorn Angthong, Nimaradee Boonapatcharoen, Sutharat Muenmee, Pradthana Prachanurak (2018) Use of aged sludge bioaugmentation in two-stage activated sludge system to enhance the biodegradation of toxic organic compounds in high strength wastewater. Chemosphere 202, 208-217. DOI: 10.1016/j.chemosphere.2018.03.084
  61. April Htet, Mana Noguchi, Kazuaki Ninomiya*, Yota Tsuge, Kosuke Kuroda, Shinya Kajita, Eiji Masai, Yoshihiro Katayama, Kazuhiro Shikinaka, Yuichiro Otsuka, Masaya Nakamura, Ryo Honda, Kenji Takahashi (2018) Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid. J. Biosci. Bioeng. 125(6), 717-722. DOI: 10.1016/j.jbiosc.2017.12.026
  62. Sulfikar, Ryo Honda*, Mana Noguchi, Ryoko Yamamoto-Ikemoto, Toru Watanabe (2018) Effects of sedimentation and aeration on antibiotic resistance induction in an activated sludge process. J. Water Environ. Technol. 16(2), 94-105. DOI: 10.2965/jwet.17-046
  63. Nutta Sangnarin Hamjinda, Wilai Chiemchaisri*, Toru Watanabe, Ryo Honda, Chart Chiemchaisri (2018) Toxicological assessment of hospital wastewater in different treatment processes. Environ. Sci. Pollut. Res. 25, 7271-7279. DOI: 10.1007/s11356-015-4812-0
  64. Phuc-Nguon Hong, Chanreaksmey Taing, Phuong-Thanh Phan, Ryo Honda* (2018) Polarity-Molecular Weight Profile of Extracellular Polymeric Substances in a Membrane Bioreactor: Comparison between Bulk Sludge and Cake Layers. J. Water Environ. Technol. 16(1), 40-53. DOI: 10.2965/jwet.17-020 *WET Excellent Paper Award
  65. Haruka Suenaga, Yuka Kosugi, Morihiro Takano, Ryo Honda, Ryoko Yamamoto-Ikemoto (2017) Dynamics of dissolved organic matter in Lake Kahokugata basin by EEM-PARAFAC analysis. Journal of Japan Society of Civil Engineers, Ser. G 73(7), III_229-240. (in Japanese) DOI: 10.2208/jscejer.73.III_229
  66. Mana Noguchi, Chizuru Hashimoto, Ryo Honda*, Yuta Teraoka, Seng Yang, Kazuaki Ninomiya, Kenji Takahashi (2017) Utilization of anaerobic digestion supernatant as a nutrient source in microalgae biomass production with a membrane photobioreactor. J. Water Environ. Technol. 15(6), 199-206. DOI: 10.2965/jwet.17-006
  67. Phuc-Nguon Hong, Ryo Honda*, Mana Noguchi, Tomohiro Ito (2017) Optimum selection of extraction methods of extracellular polymeric substances in activated sludge for effective extraction of the target components. Biochem. Eng. J. 127, 136-146. DOI: 10.1016/j.bej.2017.08.002
  68. Jarungwit Boonnorat*, Pradthana Prachanurak, Nimaradee Boonapatcharoen, Ryo Honda, Supaporn Phanwila (2017) Toxic compounds biodegradation and toxicity of high strength wastewater treated under elevated nitrogen concentration in the activated sludge and membrane bioreactor systems. Sci. Total Environ. 592, 252-261. DOI: 10.1016/j.scitotenv.2017.03.078
  69. Ryo Honda*, Yuta Teraoka, Mana Noguchi, Sen Yang (2017) Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor. J. Water Environ. Technol. 15(1), 1-11. DOI: 10.2965/jwet.15-085
  70. Taketo Togari, Ryoko Yamamoto-Ikemoto*, Hiroshi Ono, Kengo Takashima, Ryo Honda, Kojiro Tanaka (2016) Effects of microwave pretreatment of dewatered sludge from an oxidation-ditch process on the biogas yield in mesophilic anaerobic digestion. J. Water Environ. Technol. 14(3), 158-165. DOI: 10.2965/jwet.15-048
  71. Jarungwit Boonnorat*, Somkiet Techkarnjanaruk, Ryo Honda, Pradthana Prachanurak (2016) Effects of hydraulic retention time and carbon to nitrogen ratio on micro-pollutant biodegradation in membrane bioreactor for leachate treatment. Biores. Technol. 219, 53-63.DOI: 10.1016/j.biortech.2016.07.094
  72. Ryo Honda*, Toru Watanabe, Variga Sawaittayotin, Yoshifumi Masago, Rungnapa Chulasak, Kulchaya Tanong, G. Tushara Chaminda, Krison Wongsila, Chawala Sienglum, Varisara Sunthonwatthanaphong, Anupong Poonnotok, Wilai Chiemchaisri, Chart Chiemchaisri, Hiroaki Furumai, Kazuo Yamamoto (2016) Impacts of urbanization on the prevalence of antibiotic-resistant Escherichia coli in the Chaophraya River and its tributaries in Thailand. Water Sci. Technol. 73(2), 362-374. DOI: 10.2166/wst.2015.502
  73. Makiko Sekiyama*, Hong Wei Jiang, Budhi Gunawan, Linda Dewanti, Ryo Honda, Hana Furusawa, Oekan Abdoellah, Chiho Watanabe (2015) Double burden of malnutrition in rural West Java: household level analysis for father–child and mother–child pairs and the association with dietary intake. Nutrients 7(10), 8376-8391. DOI: 10.3390/nu7105399
  74. Ryo Honda*, Weerapong Rukapan, Hitomi Komura, Yuta Teraoka, Mana Noguchi, Eric M.V. Hoek (2015) Effects of membrane orientation on fouling characteristics of forward osmosis membrane in concentration of microalgae culture. Biores. Technol. 197, 429-433. DOI: 10.1016/j.biortech.2015.08.096
  75. Wilai Chiemchaisri*, Phanida Deerut, Toru Watanabe, Ryo Honda, Chart Chiemchaisri (2015) Effect of norfloxacin on antibiotic resistance of Escherichia coli: Comparison between sequencing batch reactor and sequencing batch membrane bioreactor. ASEAN Eng. J. Part C. 4(1), 81-92. ISSN: 2286-8150
  76. Duangkamon Suwan, Sukhuma Chitapornpan, Ryo Honda*, Wilai Chiemchaisri, Chart Chiemchaisri (2014) Conversion of Organic Carbon in Food Processing Wastewater to Photosynthetic Biomass in Photo-bioreactors Using Different Light Sources. Env. Eng. Res.19(3), 293-298. DOI: 10.4491/eer.2014.S1.009
  77. E. Nakakihara, R. Ikemoto-Yamamoto*, R. Honda, S. Ohtsuki, M. Takano, Y. Suetsugu and H. Watanabe (2014) Effect of the addition of rice straw on microbial community in a sewage sludge digester. Water Sci. Technol. 70(5), 819-827. DOI: 10.2166/wst.2014.261
  78. Taketo Togari, Ryoko Yamamoto-Ikemoto*, Eri Nakakihara, Takahiro Nakade, Tingting Gu, Ryo Honda (2013) Mesophilic co-digestion of dewatered sludge produced in an oxidation-ditch process and wasted fried tofu. Journal of Japan Society of Civil Engineers, Ser. G 69(7), III_597-604. (in Japanese). DOI: 10.2208/jscejer.69.III_597
  79. S. Chitapornpan, C. Chiemchaisri*, W. Chiemchaisri, R. Honda, K. Yamamoto (2013) Organic carbon recovery and photosynthetic bacteria population in an anaerobic membrane photo-bioreactor treating food processing wastewater. Biores. Technol. 141, 65-74. DOI: 10.1016/j.biortech.2013.02.048
  80. Ryo Honda*, Jarungwit Boonnorat, Chart Chiemchaisri, Wilai Chiemchaisri, Kazuo Yamamoto (2012) Carbon dioxide capture and nutrients removal utilizing treated sewage by concentrated microalgae cultivation in a membrane photobioreactor. Biores. Technol. 125, 59-64. DOI: 10.1016/j.biortech.2012.08.138
  81. Simanata Threedeach, Wilai Chiemchaisri*, Toru Watanabe, Chart Chiemchaisri, Ryo Honda, Kazuo Yamamoto (2012) Antibiotic resistance of Escherichia coli in leachates from municipal solid waste landfills: Comparison between semi-aerobic and anaerobic operations. Biores. Technol. 113, 253–258. DOI: 10.1016/j.biortech.2012.01.086
  82. S. Chitapornpan, C. Chiemchaisri*, W. Chiemchaisri, R. Honda and K. Yamamoto (2012) Photosynthetic bacteria biomass production from food processing wastewater in sequencing batch and membrane photo-bioreactor. Water Sci. Technol. 65(3), 504-512. DOI: 10.2166/wst.2012.740
  83. Ryo Honda*, Toru Watanabe, Yoshifumi Masago, Rungnapa Chulasak, Kulchaya Tanong, Chaminda Tushara G.G., Variga Sawaittayotin, Krison Wongsila, Chawala Sienglum, Varisara Sunthonwatthanaphong, Anupong Poonnotok, Chart Chiemchaisri, Hiroaki Furumai (2011) Distribution of antibiotic resistant Escherichia coli in Chao Phraya River and its tributaries in Thailand. Journal of Japan Society of Civil Engineers, Ser. G. 67(7), III_173-178.
  84. Ryo Honda*, Kensuke Fukushi (2011) Potential of greenhouse gases reduced by fuel crop cultivation utilizing sewage sludge in Japan. Journal of Japan Society of Civil Engineers, Ser. G. 67(6), II_299-305. (in Japanese) DOI: 10.2208/jscejer.67.II_299
  85. Ryo Honda*, Kensuke Fukushi (2011) Potential of energy generation by introduction of photovoltaic and small wind power system in sewage treatment plants in Japan. Journal of Japan Society of Civil Engineers, Ser. G. 67(2), 47-53. (in Japanese) DOI: 10.2208/jscejer.67.47
  86. R. Honda*, Y. Hara, M. Sekiyama and A. Hiramatsu (2010) Impacts of housing development on nutrients flow along canals in a peri-urban area of Bangkok, Thailand. Water Sci. Technol. 61(4), 1073-1080. DOI: 10.2166/wst.2010.529
  87. Yuji Hara*, Ai Hiramatsu, Ryo Honda, Makiko Sekiyama, Hirotaka Matsuda (2010) Mixed land-use planning on the periphery of large Asian cities: the case of Nonthaburi Province, Thailand. Sustain. Sci. 5(2), 237-248. DOI: 10.1007/s11625-010-0104-2
  88. Ai Hiramatsu*, Yuji Hara, Makiko Sekiyama, Ryo Honda (2009) Municipal solid waste flow and waste generation characteristics in an urban-rural fringe area in Thailand. Waste Management Res. 27(10), 951-960. DOI: 10.1177/0734242X09103819
  89. C. Chiemchaisri*, L. Jaitrong, R. Honda, K. Fukushi and K. Yamamoto (2007) Photosynthetic bacteria pond system with infra-red transmitting filter for the treatment and recovery of organic carbon from industrial wastewater. Water Sci. Technol. 56(7), 109-116. DOI: 10.2166/wst.2007.686
  90. Ryo Honda*, Kensuke Fukushi, Kazuo Yamamoto (2006) Optimization of wastewater feeding for single-cell protein production in an anaerobic wastewater treatment process utilizing purple non-sulfur bacteria in mixed culture condition. J. Biotechnol. 125(4), 565-573.DOI: 10.1016/j.jbiotec.2006.03.022
  91. Ryo Honda*, Kensuke Fukushi, Chart Chiemchaisri and Kazuo Yamamoto (2004) Control of sulfate reduction under nitrogen deficient condition in a natural anaerobic pond process for cultivation of purple non-sulfur bacteria as protein source of a fishpond. Environ. Eng. Res. 41, 61-68. DOI: 10.11532/proes1992.41.61
  92. Dai Simazaki*, Jeongik Oh, Ryo Honda, Masahiro Sugimura and Kazuo Yamamoto (2001) Appropriate mitigation technologies for arsenic groundwater pollution in Bangladesh.Environ. Sci. 8(5), 481-490. [Journal] 

Short reports (refereed)

  1. Guangming Jiang*, Ryo Honda, Sudipti Arora (2024) Editorial: Pathogen Detection and Identification in Wastewater. Water 16(4), 611. DOI: 10.3390/w16040611.
  2. Ryo Honda*, Manish Kumar, Mardalisa, Rongxuan Wang, Muhammad Adnan Sabar, Tushara Chaminda, Kwanrawee Sirikanchana, Prasert Makkeaw, Sulfikar, Feng Ju, Guangming Jiang, Bing Li, Chart Chiemchaisri, Ryota Gomi, Mohan Amarasiri, Henrietta Venter, Masateru Nishiyama, Toru Watanabe, Masaru Ihara, Ikuro Kasuga, Kozo Watanabe, Satoru Suzuki (2024) Recommendations of key elements within an integrated monitoring framework of antimicrobial resistance for Asian countries. Environ. Sci. Technol. Lett. 11(1), 5-8. DOI: 10.1021/acs.estlett.3c00820.
  3. Mardalisa, Rongxuan Wang, Ryo Honda, Wilai Chiemchaisri, Chart Chiemchaisri* (2023) Mitigation of antimicrobial resistance during wastewater treatment by membrane technologies. J. Appl. Membrane Sci. Technol. 27(1), 79-88. DOI: 10.11113/amst.v27n1.263
  4. Guangming Jiang*, Yanchen Liu, Song Tang, Masaaki Kitajima, Eiji Haramoto, Sudipti Arora, Phil Choi, Greg Jackson, Patrick M. D’Aoust, Robert Delatolla, Shuxin Zhang, Ying Guo, Jiangping Wu, Yan Chen, Elipsha Sharma, Tanjila Alam Prosun, Jiawei Zhao, Manish Kumar, Ryo Honda, Warish Ahmed, Jon Meima (2023) Moving forward with COVID-19: Future research prospects of wastewater-based epidemiology methodologies and applications. Curr. Opin. Environ. Sci. Health. 100458. DOI:  10.1016/j.coesh.2023.100458
  5. Payal Mazumder*, Siddhant Dash, Ryo Honda, Christian Sonne, Manish Kumar* (2022) Sewage surveillance for SARS-CoV-2: Molecular detection, quantification, and normalization factors. Curr. Opin. Environ. Sci. Health 28, 100363. DOI: 10.1016/j.coesh.2022.100363
  6. Ryo Honda*, Michio Murakami, Akihiko Hata, Masaru Ihara (2021) Public health benefits and ethical aspects in the collection and open sharing of wastewater-based epidemic data on COVID-19. Data Sci. J. 20(1), 27. DOI: 10.5334/dsj-2021-027
  7. Manish Kumar, Md. Alamin, Keisuke Kuroda, Kiran Dhangar, Akihiko Hata, Hiromichi Yamaguchi, Ryo Honda (2021) Reply: Potential discharge, attenuation and exposure risk of SARS-CoV-2 in natural water bodies receiving treated wastewater. npj Clean Water 4, 33. DOI :10.1038/s41545-021-00124-3
  8. Akihiko Hata, Ryo Honda* (2020) Potential sensitivity of wastewater monitoring for SARS-CoV-2: comparison with norovirus cases. Environ. Sci. Technol. 54(11), 6451–6452. DOI: 10.1021/acs.est.0c02271
  9. Michio Murakami, Akihiko Hata, Ryo Honda, Toru Watanabe* (2020) Letter to the Editor: Wastewater-Based Epidemiology Can Overcome Representativeness and Stigma Issues Related to COVID-19. Environ. Sci. Technol. 54(9), 5311. DOI: 10.1021/acs.est.0c02172

Preprints

  1. Muhammad Adnan Sabar, Than Van Huy, Yoshinori Sugie, Hiroyuki Wada, Bo Zhao, Norihisa Matsuura, Masaru Ihara, Toru Watanabe, Hiroaki Tanaka, Ryo Honda* (2023) Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent. SSRN, https://dx.doi.org/10.2139/ssrn.4394280
  2. Ryo Honda*, Norihisa Matsuura, Hiroe Hara-Yamamura, Sovannlaksmy Sorn, Yuta Morinaga, Van Huy Than, Muhammad Adnan Sabar, Yalkhin Masakke, Sawako Asakura, Toru Watanabe (2022) Transition of antimicrobial resistome in wastewater treatment plants: impact of process configuration, geographical location and season. Research Square. https://doi.org/10.21203/rs.3.rs-2011499/v1
  3. Rongxuan Wang, Md. Alamina, Shohei Tsuji, Hiroe Hara-Yamamura, Akihiko Hata, Bo Zhao, Masaru Ihara, Ryo Honda* (2022) Removal Performance of SARS-CoV-2 in Wastewater Treatment by Membrane Bioreactor, Anaerobic-Anoxic-Oxic, and Conventional Activated Sludge Processes. SSRN, https://dx.doi.org/10.2139/ssrn.4135127
  4. Manish Kumar*, Madhvi Joshi, Guangming Jiang, Rintaro Yamada, Ryo Honda, Vaibhav Srivastava, Jurgen Mahlknecht, Damia Barcelo, Sabarathinam Chidambaram, Anwar Khursheed, David Graham, Chaitanya Joshi (2022) Response of Wastewater-Based Epidemiology Predictor for the Second Wave of COVID-19 in Ahmedabad, India: A Long-term Data Perspective. medRxiv  https://dx.doi.org/10.1101/2022.05.28.22275432
  5. Hiroe Hara-Yamamura, Koki Inoue, Tomoaki Matsumoto, Ryo Honda, Kazuaki Niomiya, Hiroshi Yamamura* (2022) Rejection of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Severely Chlorine Damaged RO Membranes with Different Salt Rejection Ratios. SSRN, https://dx.doi.org/10.2139/ssrn.4048713
  6. Xuan Li, Jagadeeshkumar Kulandaivelu, Ying Guo, Shuxin Zhang, Jiahua Shi, Jake O’Brien, Sudipti Arora, Manish Kumar, Samendra P. Sherchan, Ryo Honda, Greg Jackson, Stephen Luby, Stephen Luby, Guangming Jiang* (2022) SARS-CoV-2 Shedding Sources in Wastewater and Implications for Wastewater-Based Epidemiology. SSRN,  https://dx.doi.org/10.2139/ssrn.4010827
  7. Md. Alamin, Shohei Tsuji, Akihiko Hata, Hiroe Hara-Yamamura, Ryo Honda* (2021) Selection of surrogate viruses for process control in detection of SARS-CoV-2 in wastewater. SSRN, https://dx.doi.org/10.2139/ssrn.3997714
  8. Akihiko Hata, Ryo Honda*, Hiroe Hara-Yamamura, Yuno Meuchi (2020) Detection of SARS-CoV-2 in wastewater in Japan by multiple molecular assays – implication for wastewater-based epidemiology (WBE). medRxiv  https://dx.doi.org/10.1101/2020.06.09.20126417

Books

  1. Guangming Jiang, Ryo Honda, Sudipti Arora (2024)  Pathogen Detection and Identification in Wastewater. MDPI, Basel. [ISBN: 978-3-7258-0638-6 (Hardback); 978-3-7258-0637-9 (PDF)] DOI: 10.3390/books978-3-7258-0637-9
  2. Manish Kumar, Daniel D Snow, Ryo Honda, Santanu Mukherjee (2020) Contaminants in Drinking and Wastewater Sources. Springer Nature, Singapore. [ISBN: 978-981-15-4599-3 (eBook); 978-981-15-4598-6 (Hardcover)] DOI: 10.1007/978-981-15-4599-3
  3. Manish Kumar, Daniel D. Snow, Ryo Honda (2019) Emerging Issues in the Water Environment during Anthropocene: A South East Asian Perspective. Springer Nature, Singapor. [ISBN: 978-981-32-9770-8] DOI: 10.1007/978-981-32-9771-5
  4. K. Fukushi, K.M. Hassan, R. Honda and A. Sumi (2010) Sustainability in Food and Water: An Asian Perspective. Springer, New York. [ISBN: 978-90-481-9913-6] DOI: 10.1007/978-90-481-9914-3

Book Chapters

  1. JSWE COVID-19 Taskforce (2021) SARS-CoV-2 RNA Detection Manual for Wastewater. Japan Institute of Wastewater Engineering and Technology, Tokyo. (in Japanese) [Link]
  2. Sulfikar, Sorn Sovannlaksmy, Ryo Honda*, Tushara Chaminda, Manish Kumar (2019) A Review on Antibiotic Resistance Gene (ARG) Occurrence and Detection in WWTP in Ishikawa, Japan and Colombo, Sri Lanka. In: Emerging Issues in the Water Environment during Anthropocene: A South East Asian Perspective. (M. Kumar, D.D. Snow, R. Honda eds.), Springer Nature, Singapor. [ISBN: 978-981-32-9770-8] DOI: 10.1007/978-981-32-9771-5_1
  3. Ryo Honda (2014) How does water shortage happen? — Thought from Sustainability Science. In: Introduction to Environmental Study in Asia: 15 Lectures at The University of Tokyo. (M. Furuta, S. Uda eds.), The University of Tokyo Press, pp.259-273. (in Japanese) [ISBN: 978-4-13-060311-9]
  4. Ryo Honda et al. (2014) Technical Glossary of Environmental Engineering – Japanese, Chinese, Korean, and English Translations -. （Special Course on Environment and Eco-Technology, Graduate School of Natural Science and Technology, Kanazawa University ed.), Gakujutsu Tosho Shuppan-sha, Tokyo. [ISBN: 978-4-7806-0397-2]
  5. Toru Watanabe, Chen Jinxian, Wei Chunhai, Ryo Honda, Fumiyuki Nakajima and Kazuo Yamamoto (2013) Performance of long-term operation of membrane bioreactor with in-line sludge thickener enhanced by inclined tubes (itMBR). In: Southeast Asian Water Environment 5 (K. Yamamoto, H. Furumai, H. Katayama, C. Chiemchaisri, P. Udomphon, C. Visvanathan, H. Satoh eds.), IWA Publishing, London, pp.103-109. [ISBN: 978-1780404950]
  6. Honda R., Hiramatsu A., Hara Y. and Sekiyama M. (2010) Supply-demand balance of compost between urban and agricultural sectors according to peri-urban development in an urban-rural fringe area in Asia – A case study in Nonthaburi, Thailand. In: Sustainability in Food and Water: An Asian Perspective (K. Fukushi, K.M. Hassan, R. Honda and A. Sumi eds.), Springer, New York, pp.289-296. [ISBN: 978-90-481-9913-6]
  7. Akihiko Hata, Hiroyuki Katayama, Suraphong Wattanachira, Sour Sethy, Yoshifumi Masago, Ryo Honda, and Yasuhiro Matsui (2010) Removal of microbes from highly turbid surface water in Southeast Asia using ceramic membrane filters. In: Southeast Asian Water Environment 4 (K. Fukushi, F. Kurisu, K. Oguma, H. Furumai and P. Fontanos eds.), IWA Publishing, London, pp.153-158. [ISBN: 978-1843393627]
  8. Chart Chiemchaisri, Ryo Honda, Lumpoon Chaitrong, Kensuke Fukushi and Kazuo Yamamoto (2007) Application of cleaner technology and photosynthetic wastewater treatment system in noodle processing factory. In: Southeast Asian Water Environment 2 (H. Furumai, F. Kurisu, H. Katayama, H. Satoh, S. Ohgaki and N.C. Thanh eds.), IWA Publishing, London, pp.327-334. [ISBN: 978-1843391241]
  9. Ryo Honda (2006) Utilization of Photosynthetic Bacteria in Wastewater Treatment. In: Function and Application of Photosynthetic Microorganisms (Uehara K. ed.), CMC Publications, Tokyo, pp.213-218. (in Japanese) [ISBN: 4-88231-596-3]

Publications：Journals | Books | Conferences